PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 880976
Common NameARALYDRAFT_680420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 386aa    MW: 43891.7 Da    PI: 8.6875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
880976genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-066284123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y+C++C++ F r  nL+ H r+H
   880976 62 YVCEICNQGFQRDQNLQMHRRRH 84
             9*********************9 PP

2zf-C2H214.78.6e-05141163123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C+ C+k +  +s++k H++t+
   880976 141 WVCERCSKGYAVQSDYKAHLKTC 163
              58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.29E-55985No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0186280No hitNo description
PROSITE profilePS5015710.976284IPR007087Zinc finger, C2H2
SMARTSM003550.00526284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355160105135IPR015880Zinc finger, C2H2-like
SMARTSM0035594141168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MIHYEQNNNH QNLPSSSSND LLLGINGADA TQKRKRRPAG TPDPDAEVVS LSPRTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRDKKDEEV RKRVYVCPEP TCLHHDPCHA  120
LGDLVGIKKH FRRKHSVHKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE  180
CFIEHQDTCN IREPPPTNHR PLQQHTTGLA APSRTTSTAS FGPLLHGLPL LRPPRPSNQH  240
SPAFAYPFNA SSTPFESLEL QLSIGMARTS AQAKRNEKGE TSFTKERANE EVRKAEETRQ  300
EVKRQIEMAE KDFEKAKRIR EEAKIELEKA QVVREEAIKR INATMMEITC HSCKQLFQLP  360
VMADESTSSL VMSYVSSATT EGECE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934760.0AB493476.1 Arabidopsis thaliana At1g25250 mRNA for hypothetical protein, partial cds, clone: RAAt1g25250.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893430.10.0predicted protein
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLD7KAJ70.0D7KAJ7_ARALL; Predicted protein
STRINGAl_scaffold_0001_27430.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.10.0indeterminate(ID)-domain 16